bio/appl/hmmer/report.rb - hmmsearch, hmmpfam parserer

$Id: report.rb,v 1.13 2007/04/05 23:35:40 trevor Exp $

Description

Parser class for hmmsearch and hmmpfam in the HMMER package.

Examples

   #for multiple reports in a single output file (example.hmmpfam)
   Bio::HMMER.reports(File.read("example.hmmpfam")) do |report|
     report.program['name']
     report.parameter['HMM file']
     report.query_info['Query sequence']
     report.hits.each do |hit|
       hit.accession
       hit.description
       hit.score
       hit.evalue
       hit.hsps.each do |hsp|
         hsp.accession
         hsp.domain
         hsp.evalue
         hsp.midline
     end
   end

References

• HMMER hmmer.wustl.edu/

Required files