| Path: | lib/bio/appl/blat/report.rb (CVS) |
| Last Update: | Fri Apr 06 08:35:39 +0900 2007 |
| Copyright: | Copyright (C) 2004 GOTO Naohisa <ng@bioruby.org> |
| License: | The Ruby License |
$Id: report.rb,v 1.13 2007/04/05 23:35:39 trevor Exp $
BLAT result parser (psl / pslx format).
In BLAT results, the start position of a sequnece is numbered as 0. On the other hand, in many other homology search programs, the start position of a sequence is numbered as 1. To keep compatibility, the BLAT parser adds 1 to every position number.