Class Bio::Alignment::FactoryTemplate::FileInFileOutWithTree
In: lib/bio/alignment.rb  (CVS)
Parent: FileInFileOut

Template class for alignment application factory. The program needs: input: file (cannot accept stdin), format = fasta format output: file (parser should be specified by DEFAULT_PARSER) Tree (*.dnd) output is also supported.

Methods

reset  

Attributes

output_dnd  [R]  alignment guide tree generated by the program (*.dnd file)

Public Instance methods

reset()

[Source]

# File lib/bio/alignment.rb, line 2485
        def reset
          @output_dnd = nil
          super
        end

[Validate]